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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
82
DNA binding
9
DNA accessibility
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
December, 2017
9
February, 2018
8
January, 2021
2
January, 2018
Available data
96
bam
87
fastq
84
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
tsv
3
bed bed3+
Organism
92
Homo sapiens
Biosample type
61
cell line
23
in vitro differentiated cells
8
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
84
AMP
8
T1D
Genome assembly (visualization)
70
hg19
69
GRCh38
1
hg18
Lab
84
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
60
1
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
peripheral blood mononuclear cell
8
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