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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
40
DNase-seq
36
ATAC-seq
14
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
76
DNA accessibility
71
DNA binding
14
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
34
broad histone mark
18
control
18
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
39
June, 2019
27
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
Available data
125
bed narrowPeak
121
bam
97
bigWig
90
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
171
Homo sapiens
Biosample type
166
tissue
5
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
171
AMP
Genome assembly (visualization)
126
hg19
98
GRCh38
Lab
171
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
organ_slims!
lung
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
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primary cell
retinal pigment epithelial cell
3
1
1
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