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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
37
DNase-seq
29
ATAC-seq
14
total RNA-seq
6
Hi-C
6
RRBS
4
pCHi-C
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
67
DNA accessibility
44
DNA binding
15
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
27
February, 2023
26
August, 2017
21
October, 2019
7
July, 2019
7
May, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
93
bed narrowPeak
74
bigWig
64
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
143
Homo sapiens
Biosample type
126
tissue
17
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
143
AMP
Genome assembly (visualization)
101
hg19
53
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
3
15
muscle of arm
17
+ See 5 more…
primary cell
skeletal muscle satellite cell
8
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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