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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
35
ATAC-seq
15
total RNA-seq
8
WGBS
7
DNase-seq
5
pCHi-C
1
RNA microarray
1
RRBS
Assay category
98
DNA binding
42
DNA accessibility
15
Transcription
9
DNA methylation
Target of assay
41
histone
41
histone modification
33
control
24
broad histone mark
24
transcription factor
17
narrow histone mark
6
RNA binding protein
3
other context
3
other post-translational modification
Date released
57
August, 2017
28
February, 2023
23
October, 2018
22
October, 2019
10
November, 2018
8
June, 2019
7
December, 2018
7
January, 2019
2
October, 2017
1
August, 2018
1
August, 2021
1
January, 2018
1
July, 2019
1
May, 2023
1
November, 2019
Available data
473
bam
447
bigWig
tsv
68
fastq
60
bed narrowPeak
29
bigBed narrowPeak
11
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bedpe bed3+
Organism
169
Homo sapiens
Biosample type
164
tissue
5
primary cell
1
in vitro differentiated cells
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
170
AMP
Genome assembly (visualization)
76
hg19
48
GRCh38
Lab
170
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
170 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
spleen
20
1
2
1
islet of Langerhans
2
1
14
4
retina
15
3
omental fat pad
11
1
2
+ See 5 more…
primary cell
retinal pigment epithelial cell
3
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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