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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
133
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
99
histone
99
histone modification
57
broad histone mark
42
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
14
February, 2021
13
July, 2019
10
October, 2019
2
March, 2020
Available data
215
bigWig
200
bam
185
bed narrowPeak
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
220
Homo sapiens
Biosample type
206
tissue
14
cell line
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
220
AMP
Genome assembly (visualization)
190
GRCh38
112
hg19
Lab
180
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
files.file_type!
tsv
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
220 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
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cell line
smooth muscle cell of the coronary artery
6
8
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