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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
1
single cell RNA-seq
Assay category
64
DNA binding
38
DNA accessibility
8
DNA methylation
1
Transcription
Target of assay
39
histone
39
histone modification
20
broad histone mark
20
control
19
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
4
October, 2019
2
February, 2021
Available data
tsv
78
bed narrowPeak
49
bigWig
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
111
Homo sapiens
Biosample type
106
tissue
3
primary cell
2
cell line
Organ
279
pancreas
213
kidney
204
epithelium
154
liver
108
brain
107
heart
91
connective tissue
89
bone element
62
adipose tissue
61
blood vessel
61
vasculature
44
artery
23
limb
22
eye
20
musculature of body
19
lung
14
blood
14
bodily fluid
11
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
thymus
Project
111
AMP
Genome assembly (visualization)
196
GRCh38
hg19
Lab
71
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
assembly!
hg19
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
single cell RNA-seq
tissue
left cardiac atrium
40
coronary artery
2
35
heart left ventricle
6
4
heart
2
1
2
1
heart right ventricle
2
2
+ See 3 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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