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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ATAC-seq
30
ChIP-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
47
DNA accessibility
30
DNA binding
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
20
control
6
histone
6
histone modification
4
transcription factor
3
broad histone mark
3
narrow histone mark
Date released
36
February, 2023
14
February, 2021
14
July, 2019
11
April, 2019
6
May, 2019
6
October, 2019
2
June, 2019
2
March, 2020
Available data
211
bam
184
bigWig
tsv
151
bed narrowPeak
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
91
Homo sapiens
Biosample type
74
tissue
14
cell line
3
primary cell
Organ
438
pancreas
292
epithelium
259
liver
226
kidney
178
connective tissue
133
brain
101
bone element
91
heart
85
vasculature
83
blood vessel
80
adipose tissue
58
artery
50
eye
40
musculature of body
31
limb
23
embryo
19
lung
16
skeleton
15
blood
15
bodily fluid
12
nerve
11
spleen
9
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
91
AMP
Genome assembly (visualization)
62
GRCh38
27
hg19
Lab
91
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
bigBed narrowPeak
BIOSAMPLE
ASSAY
91 results
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ATAC-seq
ChIP-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
coronary artery
36
2
heart left ventricle
2
7
4
1
1
heart
7
1
1
1
heart right ventricle
2
2
1
right atrium auricular region
1
3
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cell line
smooth muscle cell of the coronary artery
8
6
primary cell
cardiac fibroblast
2
1
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