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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
47
ATAC-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
70
DNA binding
47
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
41
histone
41
histone modification
23
broad histone mark
20
control
18
narrow histone mark
9
transcription factor
5
RNA binding protein
Date released
40
May, 2024
36
February, 2023
14
February, 2021
14
July, 2019
11
April, 2019
6
May, 2019
6
October, 2019
2
June, 2019
2
March, 2020
Available data
224
bigWig
211
bam
191
bed narrowPeak
tsv
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
131
Homo sapiens
Biosample type
114
tissue
14
cell line
3
primary cell
Organ
438
pancreas
292
epithelium
259
liver
226
kidney
178
connective tissue
133
brain
131
heart
101
bone element
85
vasculature
83
blood vessel
80
adipose tissue
58
artery
50
eye
40
musculature of body
31
limb
23
embryo
19
lung
16
skeleton
15
blood
15
bodily fluid
12
nerve
11
spleen
9
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
131
AMP
Genome assembly (visualization)
102
GRCh38
27
hg19
Lab
91
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
bigBed narrowPeak
files.file_type!!
bigBed narrowPeak
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
left cardiac atrium
40
coronary artery
2
36
heart left ventricle
7
2
4
1
1
heart
7
1
1
1
heart right ventricle
2
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
2
1
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