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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
48
ATAC-seq
10
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
78
DNA binding
48
DNA accessibility
12
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
41
histone
41
histone modification
28
control
23
broad histone mark
18
narrow histone mark
9
transcription factor
5
RNA binding protein
Date released
40
May, 2024
36
February, 2023
14
February, 2021
14
July, 2019
11
April, 2019
6
May, 2019
6
October, 2019
5
November, 2018
4
December, 2018
2
June, 2019
2
March, 2020
1
January, 2019
1
October, 2017
Available data
240
bigWig
235
bam
205
bed narrowPeak
tsv
bigBed narrowPeak
31
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
24
fastq
10
bed bedMethyl
10
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
142
Homo sapiens
Biosample type
125
tissue
14
cell line
3
primary cell
Organ
438
pancreas
292
epithelium
259
liver
226
kidney
178
connective tissue
133
brain
131
heart
101
bone element
85
vasculature
83
blood vessel
80
adipose tissue
58
artery
50
eye
40
musculature of body
31
limb
23
embryo
19
lung
16
skeleton
15
blood
15
bodily fluid
12
nerve
11
spleen
9
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
142
AMP
Genome assembly (visualization)
105
GRCh38
28
hg19
Lab
102
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
bigBed narrowPeak
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
left cardiac atrium
40
coronary artery
2
36
heart left ventricle
7
2
4
1
1
spleen
8
1
2
heart
7
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
2
1
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