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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
30
DNase-seq
6
WGBS
4
ATAC-seq
Assay category
114
DNA binding
34
DNA accessibility
6
DNA methylation
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
17
transcription factor
11
RNA binding protein
Date released
47
April, 2019
40
May, 2024
33
June, 2019
15
May, 2019
10
July, 2019
5
October, 2019
4
February, 2021
Available data
224
bigWig
211
bam
191
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
154
Homo sapiens
Biosample type
144
tissue
6
primary cell
4
cell line
Organ
460
liver
215
pancreas
210
brain
154
epithelium
154
heart
119
kidney
97
vasculature
96
connective tissue
92
blood vessel
87
limb
62
musculature of body
55
blood
55
bodily fluid
31
artery
27
adipose tissue
27
nerve
18
ureter
16
spleen
15
embryo
15
vein
6
eye
1
pituitary gland
Project
154
AMP
Genome assembly (visualization)
153
GRCh38
105
hg19
Lab
114
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
tissue
left cardiac atrium
40
1
heart left ventricle
29
3
2
2
heart
12
18
1
heart right ventricle
11
1
2
right atrium auricular region
7
2
1
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primary cell
cardiac fibroblast
3
3
cell line
smooth muscle cell of the coronary artery
4
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