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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
39
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
88
DNA binding
69
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
18
control
8
transcription factor
6
RNA binding protein
Date released
57
April, 2019
36
February, 2023
35
June, 2019
21
May, 2019
February, 2021
14
July, 2019
6
October, 2019
2
March, 2020
Available data
145
bam
139
bed narrowPeak
128
bigWig
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
171
Homo sapiens
Biosample type
162
tissue
9
primary cell
Organ
614
liver
529
pancreas
368
epithelium
330
kidney
260
brain
200
connective tissue
171
heart
154
vasculature
148
blood vessel
109
limb
90
adipose tissue
87
musculature of body
69
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
9
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
171
AMP
Genome assembly (visualization)
144
GRCh38
106
hg19
Lab
171
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
files.file_type!
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
10
1
2
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primary cell
cardiac fibroblast
5
3
1
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