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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
47
ATAC-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
129
DNA binding
47
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
June, 2019
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
2
March, 2020
Available data
191
bigWig
176
bam
tsv
158
bed narrowPeak
61
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
190
Homo sapiens
Biosample type
175
tissue
14
cell line
1
primary cell
Organ
615
liver
525
pancreas
348
epithelium
249
kidney
230
brain
190
heart
188
connective tissue
161
vasculature
157
blood vessel
101
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
49
eye
44
musculature of body
38
nerve
24
spleen
23
embryo
22
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
190
AMP
Genome assembly (visualization)
163
GRCh38
88
hg19
Lab
150
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
month_released!
June, 2019
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
4
1
1
coronary artery
5
36
left cardiac atrium
40
heart
14
1
1
1
heart right ventricle
13
2
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
1
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