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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
47
ATAC-seq
30
DNase-seq
3
Hi-C
2
WGBS
1
single cell RNA-seq
Assay category
134
DNA binding
77
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
Transcription
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
6
July, 2019
6
October, 2019
2
March, 2020
Available data
223
bigWig
210
bam
191
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
217
Homo sapiens
Biosample type
195
tissue
14
cell line
8
primary cell
Organ
614
liver
523
pancreas
epithelium
326
kidney
258
brain
217
heart
203
connective tissue
166
vasculature
161
blood vessel
114
limb
101
bone element
88
adipose tissue
83
artery
83
musculature of body
69
blood
69
bodily fluid
55
eye
38
nerve
23
embryo
22
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
217
AMP
Genome assembly (visualization)
190
GRCh38
116
hg19
Lab
177
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
files.file_type!
tsv
bigBed bedMethyl
organ_slims!
epithelium
BIOSAMPLE
ASSAY
217 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
single cell RNA-seq
tissue
coronary artery
5
36
2
heart left ventricle
35
2
3
1
2
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
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