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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
2
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
129
DNA binding
77
DNA accessibility
10
DNA methylation
2
3D chromatin structure
1
Transcription
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
14
July, 2019
October, 2019
2
March, 2020
Available data
217
bigWig
204
bam
186
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
2
bedpe bed3+
2
hic
Organism
219
Homo sapiens
Biosample type
196
tissue
14
cell line
9
primary cell
Organ
611
liver
511
pancreas
336
epithelium
306
kidney
219
heart
202
connective tissue
175
brain
121
vasculature
115
blood vessel
101
bone element
89
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
57
artery
50
limb
35
eye
24
spleen
23
embryo
19
lung
18
ureter
16
skeleton
1
bone marrow
1
pericardium
1
thymus
1
vein
Project
219
AMP
Genome assembly (visualization)
191
GRCh38
112
hg19
Lab
179
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
files.file_type!
tsv
organ_slims!
gonad
month_released!
October, 2019
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
9
18
1
1
heart right ventricle
13
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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