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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
69
DNase-seq
59
single cell RNA-seq
49
total RNA-seq
37
ChIP-seq
6
snATAC-seq
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
151
DNA accessibility
108
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
2
July, 2019
1
December, 2019
Available data
161
bed narrowPeak
113
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
300
Homo sapiens
Biosample type
287
tissue
primary cell
13
cell line
Organ
608
liver
300
kidney
291
pancreas
242
brain
182
connective tissue
176
heart
133
blood vessel
133
vasculature
115
limb
100
bone element
90
adipose tissue
83
artery
78
epithelium
75
musculature of body
61
blood
61
bodily fluid
51
eye
38
nerve
24
spleen
23
embryo
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
253
AMP
47
KPMP
Genome assembly (visualization)
171
GRCh38
98
hg19
Lab
142
Katalin Susztak, Upenn
109
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
files.file_type!
tsv
biosample_type!
primary cell
BIOSAMPLE
ASSAY
300 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
13
59
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
HEK293T
2
glomerular visceral epithelial cell
1
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