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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
139
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
Transcription
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
66
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
7
May, 2019
6
February, 2021
5
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
556
bam
516
bigWig
tsv
105
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
204
Homo sapiens
Biosample type
204
tissue
1
in vitro differentiated cells
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
205
AMP
Genome assembly (visualization)
120
hg19
118
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
205 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
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in vitro differentiated cells
white fat cell
1
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