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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
66
ChIP-seq
36
DNase-seq
14
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
50
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
92
February, 2021
65
October, 2019
32
June, 2019
8
February, 2023
7
May, 2019
5
July, 2019
1
May, 2021
Available data
174
bam
149
bigWig
94
bed narrowPeak
88
txt
84
bigBed narrowPeak
tsv
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
210
Homo sapiens
Biosample type
209
tissue
1
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
209
AMP
1
T1D
Genome assembly (visualization)
98
hg19
94
GRCh38
Lab
209
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
210 results
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RNA microarray
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
bone element
84
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
megakaryocyte
1
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