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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
17
DNA binding
13
DNA accessibility
9
Transcription
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
19
April, 2020
1
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
tsv
Organism
40
Homo sapiens
Biosample type
22
primary cell
19
tissue
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
22
AMP
19
LungMap
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
files.file_type!
tsv
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
tissue
lung
10
9
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