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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
61
ATAC-seq
18
total RNA-seq
11
snATAC-seq
7
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
Assay category
117
DNA binding
81
DNA accessibility
18
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
58
August, 2017
51
October, 2018
24
May, 2022
20
November, 2019
18
February, 2023
8
January, 2021
7
November, 2018
6
March, 2020
6
September, 2017
5
March, 2019
5
October, 2017
4
July, 2018
4
June, 2019
4
November, 2020
3
October, 2019
2
July, 2019
2
May, 2019
1
August, 2021
1
August, 2022
1
May, 2021
Available data
429
bam
373
bigWig
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
223
Homo sapiens
Biosample type
238
primary cell
230
tissue
58
cell line
3
in vitro differentiated cells
Organ
287
kidney
242
brain
230
pancreas
207
liver
162
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
200
AMP
30
T1D
Genome assembly (visualization)
141
hg19
115
GRCh38
Lab
168
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
tissue
islet of Langerhans
50
57
17
7
1
3
4
1
1
body of pancreas
35
4
4
2
pancreas
16
1
4
2
1
2
1
1
endocrine pancreas
16
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