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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
61
ATAC-seq
18
total RNA-seq
11
snATAC-seq
7
DNase-seq
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
Assay category
117
DNA binding
81
DNA accessibility
18
Transcription
6
DNA methylation
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
58
August, 2017
51
October, 2018
24
May, 2022
19
November, 2019
18
February, 2023
8
January, 2021
7
November, 2018
6
September, 2017
5
March, 2020
5
October, 2017
4
July, 2018
4
June, 2019
4
March, 2019
4
November, 2020
3
October, 2019
2
July, 2019
2
May, 2019
1
August, 2022
1
May, 2021
Available data
429
bam
373
bigWig
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
Organism
219
Homo sapiens
Biosample type
235
primary cell
226
tissue
56
cell line
3
in vitro differentiated cells
Organ
286
kidney
242
brain
226
pancreas
206
liver
199
heart
118
blood vessel
118
vasculature
111
limb
100
bone element
90
connective tissue
89
adipose tissue
69
artery
69
musculature of body
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
196
AMP
30
T1D
Genome assembly (visualization)
138
hg19
115
GRCh38
Lab
166
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
226 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
MeRIP-seq
WGBS
FAIRE-seq
RRBS
tissue
islet of Langerhans
50
57
17
7
1
4
1
1
body of pancreas
35
4
4
2
pancreas
16
1
4
2
2
1
1
endocrine pancreas
16
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