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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
79
ATAC-seq
18
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
145
DNA binding
100
DNA accessibility
18
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
92
histone
92
histone modification
51
broad histone mark
41
narrow histone mark
40
control
18
transcription factor
9
RNA binding protein
5
nucleotide modification
Date released
58
August, 2017
51
October, 2018
35
November, 2019
24
May, 2022
19
February, 2023
18
May, 2021
18
October, 2019
10
November, 2020
8
January, 2021
8
March, 2020
7
November, 2018
6
September, 2017
5
March, 2019
5
October, 2017
4
July, 2018
4
June, 2019
3
August, 2021
2
July, 2019
2
May, 2019
1
August, 2022
Available data
492
bam
429
bigWig
tsv
213
fastq
144
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
280
Homo sapiens
Biosample type
238
primary cell
230
tissue
58
cell line
3
in vitro differentiated cells
Organ
593
liver
300
kidney
288
pancreas
242
brain
176
heart
133
blood vessel
133
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
83
artery
75
musculature of body
61
blood
61
bodily fluid
56
epithelium
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
256
AMP
32
T1D
Genome assembly (visualization)
165
hg19
137
GRCh38
Lab
220
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
288 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
50
57
17
7
4
1
3
1
1
body of pancreas
35
4
4
2
pancreas
16
1
4
2
1
2
1
1
endocrine pancreas
16
cell line
EndoC_BH1
15
18
6
1
2
1
Panc1
13
1
1
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