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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
ATAC-seq
18
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
145
DNA binding
21
DNA accessibility
18
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
92
histone
92
histone modification
51
broad histone mark
41
narrow histone mark
40
control
18
transcription factor
9
RNA binding protein
5
nucleotide modification
Date released
58
August, 2017
51
October, 2018
15
November, 2019
15
October, 2019
10
November, 2020
8
February, 2023
8
January, 2021
7
November, 2018
6
March, 2020
6
May, 2022
6
September, 2017
4
July, 2018
4
June, 2019
3
August, 2021
2
July, 2019
2
May, 2019
2
May, 2021
1
August, 2022
1
March, 2019
Available data
449
bam
420
bigWig
tsv
189
fastq
102
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
19
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
201
Homo sapiens
Biosample type
169
tissue
167
primary cell
40
cell line
3
in vitro differentiated cells
Organ
571
liver
238
brain
225
kidney
209
pancreas
169
heart
107
limb
88
bone element
87
blood vessel
87
vasculature
84
connective tissue
83
adipose tissue
74
musculature of body
60
blood
60
bodily fluid
38
artery
37
nerve
26
epithelium
23
eye
23
spleen
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
188
AMP
21
T1D
Genome assembly (visualization)
118
hg19
110
GRCh38
Lab
175
AMP-T2D consortium
22
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
24
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
files.file_type!
tsv
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
209 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
50
17
7
4
1
3
1
1
body of pancreas
35
4
2
pancreas
16
1
4
2
1
2
1
1
endocrine pancreas
16
cell line
EndoC_BH1
15
6
1
2
1
Panc1
13
1
1
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