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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
41
ATAC-seq
7
DNase-seq
2
FAIRE-seq
Assay category
73
DNA binding
50
DNA accessibility
Target of assay
62
histone
62
histone modification
36
broad histone mark
26
narrow histone mark
11
transcription factor
7
RNA binding protein
Date released
40
October, 2018
32
August, 2017
19
November, 2019
18
May, 2022
4
June, 2019
4
October, 2017
3
November, 2018
2
March, 2020
1
May, 2019
Available data
429
bam
373
bigWig
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
117
Homo sapiens
Biosample type
123
tissue
68
primary cell
21
cell line
2
in vitro differentiated cells
Organ
192
brain
173
heart
153
kidney
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
121
AMP
2
T1D
Genome assembly (visualization)
121
hg19
97
GRCh38
Lab
105
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
20
37
1
1
body of pancreas
26
4
4
pancreas
13
2
1
endocrine pancreas
14
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