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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
71
total RNA-seq
57
ChIP-seq
41
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
122
DNA accessibility
71
Transcription
57
DNA binding
43
DNA methylation
8
3D chromatin structure
Target of assay
53
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
104
May, 2022
56
February, 2023
29
August, 2017
24
November, 2019
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
6
September, 2017
5
March, 2019
4
July, 2018
3
August, 2021
3
March, 2020
3
October, 2022
2
July, 2019
1
August, 2022
1
May, 2019
Available data
689
bam
bigWig
471
fastq
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
312
Homo sapiens
Biosample type
148
primary cell
129
tissue
36
cell line
1
in vitro differentiated cells
Organ
314
pancreas
214
epithelium
211
kidney
157
liver
110
connective tissue
101
bone element
71
heart
71
vasculature
70
blood vessel
63
adipose tissue
52
artery
50
brain
50
eye
28
limb
25
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
150
AMP
136
HPAP
28
T1D
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
136
Klaus Kaestner, Upenn
111
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
4
audit script error
files.file_type!
tsv
bigWig
BIOSAMPLE
ASSAY
314 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
22
42
6
25
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
55
17
21
7
4
3
1
pancreas
1
3
4
1
1
body of pancreas
9
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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