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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ATAC-seq
60
total RNA-seq
41
WGBS
10
snATAC-seq
4
ChIP-seq
3
Hi-C
Assay category
70
DNA accessibility
60
Transcription
41
DNA methylation
4
DNA binding
3
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
80
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
5
March, 2020
3
October, 2022
1
May, 2021
Available data
80
zippedFastqFolder
69
fastq
16
bigWig
tsv
6
bam
4
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
178
Homo sapiens
Biosample type
146
primary cell
30
tissue
2
cell line
Organ
178
pancreas
148
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
146
HPAP
32
T1D
Genome assembly (visualization)
14
GRCh38
7
hg19
Lab
146
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
files.file_type!
tsv
bed bed3+
award.project!
AMP
BIOSAMPLE
ASSAY
178 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
29
42
25
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
11
7
6
2
pancreas
4
cell line
EndoC_BH1
2
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