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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
71
total RNA-seq
57
ChIP-seq
41
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
71
Transcription
57
DNA binding
43
DNA methylation
11
DNA accessibility
8
3D chromatin structure
Target of assay
53
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
47
May, 2022
45
February, 2023
29
August, 2017
16
September, 2020
11
October, 2018
10
November, 2020
8
January, 2021
7
October, 2019
6
September, 2017
4
July, 2018
4
November, 2019
3
August, 2021
3
March, 2020
3
October, 2022
2
July, 2019
2
May, 2021
1
August, 2022
1
March, 2019
1
May, 2019
Available data
624
bam
bigWig
415
fastq
tsv
150
bed narrowPeak
69
bigBed narrowPeak
41
zippedFastqFolder
29
bed bed3+
19
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
201
Homo sapiens
Biosample type
109
primary cell
74
tissue
19
cell line
1
in vitro differentiated cells
Organ
203
pancreas
155
liver
145
epithelium
136
kidney
94
connective tissue
89
bone element
61
adipose tissue
48
brain
28
heart
28
vasculature
27
blood vessel
25
musculature of body
22
eye
22
limb
19
lung
14
blood
14
bodily fluid
11
nerve
9
artery
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
thymus
Project
97
HPAP
89
AMP
17
T1D
Genome assembly (visualization)
11
hg19
2
GRCh38
Lab
97
Klaus Kaestner, Upenn
72
AMP-T2D consortium
22
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
11
inconsistent ontology term
4
audit script error
files.file_type!
tsv
bigWig
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
203 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
42
6
25
1
pancreatic beta cell
11
6
16
1
pancreatic acinar cell
1
tissue
islet of Langerhans
17
21
7
4
3
1
pancreas
1
3
4
1
1
body of pancreas
9
endocrine pancreas
2
cell line
EndoC_BH1
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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