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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ChIP-seq
150
ATAC-seq
71
total RNA-seq
45
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
199
DNA binding
Target of assay
136
histone
136
histone modification
70
broad histone mark
66
narrow histone mark
45
control
18
transcription factor
9
RNA binding protein
Date released
78
August, 2017
51
October, 2018
32
September, 2018
13
November, 2019
13
October, 2019
6
September, 2017
3
March, 2020
2
May, 2019
1
May, 2021
Available data
198
bam
161
bigWig
147
fastq
140
bed narrowPeak
59
bigBed narrowPeak
21
bed bed3+
tagAlign
12
bed broadPeak
Organism
199
Homo sapiens
Biosample type
101
tissue
70
primary cell
28
cell line
Organ
466
liver
199
pancreas
131
connective tissue
122
epithelium
100
brain
96
vasculature
93
blood vessel
88
heart
66
limb
65
adipose tissue
60
blood
60
bodily fluid
52
kidney
35
nerve
28
artery
24
musculature of body
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
Project
195
AMP
4
T1D
Genome assembly (visualization)
149
GRCh38
149
hg19
Lab
199
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
tsv
tagAlign
BIOSAMPLE
ASSAY
199 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
41
body of pancreas
35
endocrine pancreas
16
pancreas
9
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
cell line
EndoC_BH1
15
Panc1
13
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