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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ATAC-seq
88
ChIP-seq
53
total RNA-seq
41
WGBS
6
MeRIP-seq
4
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
89
DNA accessibility
88
DNA binding
53
Transcription
41
DNA methylation
4
3D chromatin structure
Target of assay
71
histone
71
histone modification
38
narrow histone mark
33
broad histone mark
18
control
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
80
May, 2022
46
September, 2018
41
August, 2017
38
February, 2023
20
May, 2021
19
September, 2020
15
November, 2019
October, 2019
7
August, 2020
6
November, 2020
5
September, 2017
3
October, 2022
2
August, 2021
2
March, 2020
Available data
258
fastq
246
bam
242
bigWig
tsv
84
bed narrowPeak
80
zippedFastqFolder
22
bigBed narrowPeak
4
bedpe bed3+
4
hic
3
cool
3
tagAlign
Organism
283
Homo sapiens
Biosample type
238
primary cell
tissue
43
cell line
3
in vitro differentiated cells
Organ
409
liver
324
epithelium
284
pancreas
114
connective tissue
69
blood
69
bodily fluid
28
vasculature
23
embryo
23
heart
23
kidney
22
blood vessel
18
brain
14
artery
12
musculature of body
5
eye
1
adipose tissue
1
bone element
1
bone marrow
1
vein
Project
146
HPAP
136
AMP
2
T1D
Genome assembly (visualization)
106
GRCh38
101
hg19
Lab
146
Klaus Kaestner, Upenn
132
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
42
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
tsv
month_released!
October, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
284 results
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ATAC-seq
ChIP-seq
total RNA-seq
WGBS
MeRIP-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
35
13
42
25
1
pancreatic beta cell
23
13
11
16
1
pancreatic endocrine cell
23
pancreatic acinar cell
9
8
1
pancreatic ductal cell
4
13
cell line
EndoC_BH1
18
15
6
1
2
1
in vitro differentiated cells
pancreatic PP cell
3
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