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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
151
ATAC-seq
71
total RNA-seq
46
WGBS
41
DNase-seq
15
Hi-C
12
snATAC-seq
10
MeRIP-seq
7
RRBS
2
Capture-C
2
FAIRE-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
151
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
3
August, 2017
3
October, 2019
3
September, 2020
2
March, 2020
1
January, 2018
Available data
65
bam
64
bed narrowPeak
56
fastq
42
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
tsv
Organism
151
Homo sapiens
Biosample type
71
primary cell
62
tissue
18
cell line
Organ
150
pancreas
102
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
91
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
70
hg19
59
GRCh38
Lab
68
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
18
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
151 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
57
body of pancreas
4
skeletal muscle tissue
1
cell line
EndoC_BH1
18
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