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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
59
total RNA-seq
56
ATAC-seq
4
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
99
DNA binding
61
DNA accessibility
59
Transcription
4
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
51
August, 2017
37
February, 2023
31
September, 2018
30
October, 2018
24
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
5
October, 2017
1
March, 2019
Available data
622
bam
554
bigWig
423
fastq
tsv
155
bed narrowPeak
80
zippedFastqFolder
72
bigBed narrowPeak
23
bed bed3+
17
bed broadPeak
12
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
218
Homo sapiens
Biosample type
124
primary cell
99
tissue
Organ
441
liver
223
pancreas
129
epithelium
85
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
22
spleen
17
brain
15
embryo
4
vasculature
2
blood vessel
2
musculature of body
Project
160
AMP
63
HPAP
Genome assembly (visualization)
121
hg19
115
GRCh38
Lab
134
AMP-T2D consortium
63
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
223 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
9
42
13
pancreatic beta cell
9
11
10
pancreatic endocrine cell
11
pancreatic ductal cell
6
4
pancreatic acinar cell
4
5
tissue
islet of Langerhans
20
6
20
1
1
body of pancreas
28
4
2
2
pancreas
12
2
1
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