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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
ATAC-seq
4
total RNA-seq
1
GRO-seq
Assay category
22
DNA binding
12
DNA accessibility
4
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
9
February, 2018
8
February, 2021
8
February, 2023
1
January, 2018
Available data
44
bam
29
bigWig
27
fastq
22
bed narrowPeak
tsv
4
bed bed3
4
txt
3
bed bed3+
Organism
39
Homo sapiens
Biosample type
23
in vitro differentiated cells
16
tissue
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
39
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
1
hg18
Lab
39
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
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