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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
ATAC-seq
2
WGBS
1
DNase-seq
Assay category
80
DNA binding
9
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
24
November, 2018
8
January, 2021
Available data
83
bam
83
fastq
69
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
tsv
Organism
91
Homo sapiens
Biosample type
60
cell line
23
tissue
8
primary cell
Organ
594
liver
379
pancreas
266
epithelium
256
brain
255
kidney
181
connective tissue
178
heart
122
vasculature
116
blood vessel
107
limb
89
bone element
86
musculature of body
84
adipose tissue
68
blood
68
bodily fluid
38
artery
37
nerve
28
eye
23
embryo
23
spleen
22
vein
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
83
AMP
8
T1D
Genome assembly (visualization)
69
GRCh38
67
hg19
Lab
83
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
tsv
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
snATAC-seq
WGBS
DNase-seq
cell line
GM12878
60
tissue
spleen
20
2
1
primary cell
peripheral blood mononuclear cell
8
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