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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
7
ATAC-seq
4
total RNA-seq
2
WGBS
1
DNase-seq
Assay category
20
DNA binding
8
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
2
February, 2021
1
October, 2017
Available data
26
bam
24
fastq
16
bed narrowPeak
16
bigWig
13
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
tsv
Organism
34
Homo sapiens
Biosample type
34
tissue
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
34
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
34
AMP-T2D consortium
files.file_type!
tsv
organ_slims!
limb
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
tissue
spleen
20
1
2
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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