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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
DNase-seq
14
total RNA-seq
5
ChIP-seq
4
pCHi-C
1
RRBS
Assay category
50
DNA accessibility
14
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
27
February, 2023
25
June, 2019
21
October, 2019
1
July, 2019
Available data
51
bed narrowPeak
25
bam
24
bigBed narrowPeak
24
bigWig
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
74
Homo sapiens
Biosample type
69
tissue
5
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
74
AMP
Genome assembly (visualization)
52
hg19
24
GRCh38
Lab
74
AMP-T2D consortium
files.file_type!
tsv
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
DNase-seq
total RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
renal pelvis
10
left renal pelvis
4
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primary cell
retinal pigment epithelial cell
1
3
1
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