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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
215
DNA binding
37
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
November, 2018
1
February, 2023
Available data
240
bam
219
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
257
Homo sapiens
Biosample type
242
tissue
15
primary cell
Organ
559
liver
520
pancreas
360
epithelium
327
kidney
257
brain
196
connective tissue
179
heart
163
vasculature
158
blood vessel
115
limb
101
bone element
87
musculature of body
85
adipose tissue
82
artery
59
blood
59
bodily fluid
55
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
257
AMP
Genome assembly (visualization)
202
GRCh38
149
hg19
Lab
257
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tsv
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
257 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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