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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
142
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
48
August, 2017
43
May, 2021
32
December, 2017
28
August, 2021
16
February, 2018
16
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
254
bam
222
bigWig
tsv
110
fastq
95
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
207
Homo sapiens
Biosample type
1398
tissue
696
primary cell
524
cell line
207
in vitro differentiated cells
5
stem cell
Organ
72
connective tissue
19
embryo
15
epithelium
8
liver
3
pancreas
1
adipose tissue
Project
207
AMP
Genome assembly (visualization)
134
hg19
101
GRCh38
4
hg18
Lab
163
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
25
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
tsv
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
207 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
47
8
1
1
1
embryonic stem cell
29
6
5
neural progenitor cell
14
10
pancreatic endoderm
14
1
hepatocyte
8
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