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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
6
3D chromatin structure
6
DNA binding
6
DNA methylation
1
Transcription
Target of assay
33
histone
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
7
August, 2017
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
43
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
54
Homo sapiens
Biosample type
50
tissue
4
primary cell
Organ
514
liver
378
pancreas
300
kidney
275
epithelium
128
connective tissue
123
heart
101
bone element
97
vasculature
92
blood vessel
73
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
53
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
54
AMP
Genome assembly (visualization)
40
hg19
34
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
tsv
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
54 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
4
1
1
1
gastrocnemius medialis
4
psoas muscle
2
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
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