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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
203
DNA binding
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
28
control
Date released
85
October, 2019
79
November, 2017
28
May, 2019
13
October, 2017
7
July, 2019
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
213
Homo sapiens
Biosample type
206
tissue
7
primary cell
Organ
554
liver
503
pancreas
343
epithelium
252
kidney
213
brain
196
connective tissue
195
heart
151
vasculature
149
blood vessel
101
bone element
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
52
eye
41
musculature of body
36
nerve
23
embryo
23
spleen
19
lung
18
vein
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
213
AMP
Genome assembly (visualization)
159
GRCh38
115
hg19
Lab
213
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
tsv
bed broadPeak
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
angular gyrus
15
substantia nigra
15
temporal lobe
15
+ See 66 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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