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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
905
ChIP-seq
258
ATAC-seq
178
DNase-seq
104
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
2
MeRIP-seq
Assay category
905
DNA binding
468
DNA accessibility
175
Transcription
38
DNA methylation
9
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
2
January, 2018
2
May, 2021
2
November, 2020
1
August, 2022
1
December, 2019
Available data
1898
bam
1761
bigWig
tsv
982
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1678
Homo sapiens
Biosample type
1687
tissue
817
primary cell
538
cell line
259
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
222
pancreas
206
liver
200
heart
118
blood vessel
118
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
73
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1594
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
940
GRCh38
827
hg19
Lab
1338
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
target.investigated_as!
nucleotide modification
month_released!
March, 2020
BIOSAMPLE
ASSAY
1687 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
islet of Langerhans
69
66
1
29
7
1
3
4
1
2
bone element
84
body of pancreas
35
4
4
2
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