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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
33
ATAC-seq
27
snATAC-seq
16
single cell RNA-seq
8
ChIP-seq
2
pCHi-C
1
total RNA-seq
Assay category
60
DNA accessibility
17
Transcription
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
7
November, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
572
bam
tsv
551
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
171
Homo sapiens
Biosample type
108
tissue
41
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
kidney
14
vasculature
8
skeleton
7
connective tissue
6
limb
3
liver
1
adipose tissue
Project
132
AMP
39
HPAP
Genome assembly (visualization)
35
GRCh38
30
hg19
Lab
118
AMP-T2D consortium
39
Klaus Kaestner, Upenn
14
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
171 results
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RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
total RNA-seq
tissue
bone element
84
kidney
11
3
adipose tissue
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 7 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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