Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
419
ChIP-seq
28
ATAC-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
419
DNA binding
30
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
83
control
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
nucleotide modification
2
other context
2
other post-translational modification
Date released
281
November, 2017
40
November, 2018
26
August, 2021
26
December, 2018
26
October, 2019
18
February, 2021
17
May, 2021
14
November, 2019
12
January, 2019
6
February, 2023
3
November, 2020
2
March, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
518
bam
459
bigWig
364
fastq
341
bed narrowPeak
294
bigBed narrowPeak
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
471
Homo sapiens
Biosample type
1671
tissue
808
primary cell
475
cell line
252
in vitro differentiated cells
6
stem cell
Organ
332
liver
54
pancreas
51
blood
51
bodily fluid
40
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
13
kidney
Project
466
AMP
7
T1D
2
community
Genome assembly (visualization)
363
hg19
302
GRCh38
Lab
441
AMP-T2D consortium
24
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
49
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
files.file_type!
tsv
target.investigated_as!
nucleotide modification
RNA binding protein
BIOSAMPLE
ASSAY
475 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
324
1
2
2
1
1
1
GM12878
50
1
EndoC_BH1
14
18
1
3
3
2
2
1
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
+ See 9 more…
See all biosamples
Download