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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
34
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
149
DNA binding
34
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
transcription factor
9
control
5
RNA binding protein
Date released
291
October, 2019
275
August, 2017
214
June, 2019
210
May, 2021
200
May, 2022
189
February, 2023
185
August, 2021
162
November, 2017
152
May, 2020
151
February, 2021
115
May, 2019
74
April, 2019
59
October, 2018
59
September, 2020
52
December, 2017
47
September, 2018
47
September, 2023
43
July, 2019
40
November, 2019
24
February, 2018
24
November, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
January, 2019
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
299
bigWig
273
bam
tsv
129
bed narrowPeak
86
tagAlign
2
bed bed3+
Organism
210
Homo sapiens
Biosample type
154
primary cell
37
in vitro differentiated cells
17
cell line
2
tissue
Organ
20
pancreas
19
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
108
AMP
102
T1D
Genome assembly (visualization)
139
hg19
99
GRCh38
Lab
172
Kyle Gaulton, UCSD
38
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
210 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
monocyte
85
13
1
1
1
CD8-positive, alpha-beta T cell
33
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
25
5
5
pancreatic PP cell
2
cell line
EndoC_BH1
1
16
tissue
pancreas
1
thymus
1
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