Experiment Matrix

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BIOSAMPLE

	ASSAY
3331 results Clear Filters	ChIP-seq	ATAC-seq	DNase-seq	total RNA-seq	single cell RNA-seq	RNA microarray	snATAC-seq	WGBS	Hi-C	pCHi-C	RRBS	MeRIP-seq	FAIRE-seq	GRO-seq	STARR-seq	Capture-C	CRISPR genome editing followed by DNA sequencing	HiChIP	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	...and 6 more
tissue
kidney	27	75	13	49	59		6		1		1		1
liver	145	20	2	20	1			3	1		1
islet of Langerhans	71	67	1	31			7		3	4	1	4	1
bone element						84
heart left ventricle	35	2	3					4	1		1
body of pancreas	35	4	4					2
coronary artery	5	36	2
left cardiac atrium	40		1
subcutaneous abdominal adipose tissue	36							3
tibial nerve	35	1	2
brain	20	1	14								1
heart	14		18		1			1	1
skeletal muscle tissue	22	1			1		1				4
pancreas	16		2	1			4	2	1		1		1
tibial artery	23	1	2
spleen	20	1	1					2
layer of hippocampus	23
muscle of leg	7		13					1
lung					9		10
retina		15	3
ascending aorta	16		1
heart right ventricle	13		1					2	1
muscle of arm			17
thoracic aorta	16	1
aorta	13							2	1
caudate nucleus	15		1
endocrine pancreas	16
substantia nigra	16
angular gyrus	15
temporal lobe	15
cingulate gyrus	14
middle frontal area 46	14
omental fat pad	11	1	2
right lobe of liver	10	1	2					1
subcutaneous adipose tissue	12	1				1
right atrium auricular region	10	1	2
germinal matrix	12
pigmented layer of retina		12
white adipose tissue	12
renal cortex interstitium			11
renal pelvis			10
right kidney			10
adipose tissue	2	3		1				3
left kidney			9
right cardiac atrium	6							1
cerebellum (Hemisphere)	4	1	1
gastrocnemius medialis									4
left renal cortex interstitium			4
left renal pelvis			4
right renal pelvis			4
superior frontal gyrus	4
central medial thalamic nucleus	3
frontal cortex			2										1
middle frontal gyrus	2		1
middle temporal gyrus	3
putamen	2		1
right renal cortex interstitium			3
acetabular part of hip bone		1		1
anterior cingulate gyrus	2
gyrus rectus	2
ilium		1		1
ischium		1		1
medial globus pallidus	2
occipital pole	2
pons	1		1
posterior cingulate gyrus	2
precuneus cortex	2
primary motor cortex	2
psoas muscle									2
pubis		1		1
secondary auditory cortex	2
superior parietal cortex	2
supramarginal gyrus	2
white matter	2
Ammon's horn			1
adipose tissue(adipose white tissue)		1
agranular insular cortex	1
amygdala	1
arcuate nucleus of hypothalamus	1
bed nucleus of stria terminalis	1
body of caudate nucleus	1
brodmann area 43	1
cerebellar cortex			1
claustrum of brain	1
cuneus	1
dentate nucleus	1
distal epiphysis		1
distal epiphysis of femur		1
distal epiphysis of humerus		1
distal epiphysis of tibia		1
dorsal lateral geniculate nucleus	1
dorsal plus ventral thalamus	1
external globus pallidus	1
fastigial nucleus	1
forelimb muscle			1
frontal pole	1
globus pallidus			1
head of caudate nucleus	1
hindlimb muscle			1
hippocampal gyrus	1
hypothalamus	1
inferior frontal gyrus	1
inferior parietal cortex			1
inferior temporal gyrus	1
insular gyrus	1
lateral hypothalamic area	1
lateral occipital gyrus	1
lateral septal nucleus	1
lingual gyrus	1
locus coeruleus	1
mammillary body	1
medial dorsal nucleus of thalamus	1
medial geniculate nucleus	1
medial segment of precentral gyrus	1
medulla oblongata			1
midbrain			1
midbrain tectum	1
myelencephalon	1
nucleus accumbens	1
occipital lobe			1
olivary body	1
orbital gyrus	1
paraterminal gyrus	1
pericardium											1
pineal body	1
piriform cortex	1
pituitary gland	1
planum polare	1
planum temporale	1
postcentral gyrus	1
posterior cingulate cortex		1
primary somatosensory cortex	1
proximal epiphysis		1
proximal epiphysis of femur		1
proximal epiphysis of humerus		1
proximal epiphysis of tibia		1
pulvinar nucleus	1
raphe nuclei	1
red nucleus	1
subiculum	1
substantia nigra pars reticulata	1
subthalamic nucleus	1
superior occipital gyrus	1
superior temporal gyrus			1
suprachiasmatic nucleus	1
temporal pole	1
thymus										1
transverse temporal gyrus	1
uncus of parahippocampal gyrus	1
ventral anterior nucleus of thalamus	1
primary cell
Langerhans cell					85		48
pancreatic alpha cell	13	35		42				25	1
monocyte	85	15		1						1
pancreatic beta cell	13	23		11				16	1
exocrine cell				39
CD8-positive, alpha-beta T cell	33	2		2						1
naive thymus-derived CD4-positive, alpha-beta T cell	2	22		1						1
pancreatic endocrine cell	23
CD4-positive, alpha-beta memory T cell		22
endothelial cell of umbilical vein	17		2						2				1
pancreatic acinar cell	8	9							1
skeletal muscle myoblast	15		2								1
pancreatic ductal cell	13	4
epithelial cell of proximal tubule	10		1								1
macrophage		11								1
cardiac fibroblast	5		3								1
peripheral blood mononuclear cell							8
skeletal muscle satellite cell	8
kidney epithelial cell	5		1								1
mesenchymal stem cell	7
hepatocyte	4		1								1
astrocyte of the cerebellum	3		1						1
brain microvascular endothelial cell	3		1						1
cardiac muscle cell	3		1								1
choroid plexus epithelial cell	3		1								1
retinal pigment epithelial cell	3		1								1
osteoblast		2	1							1
skeletal muscle cell	2		1								1
B cell		2								1
kidney tubule cell			3
naive B cel		2								1
naive thymus-derived CD8-positive, alpha-beta T cell		2								1
neutrophil	1			1						1
CD4-positive, alpha-beta T cell										2
T follicular helper cell		2
T-helper 1 cell		2
T-helper 17 cell		2
T-helper 2 cell		2
brain pericyte			1						1
central memory CD8-positive, alpha-beta T cell		2
effector CD4-positive, alpha-beta T cell		2
effector T cell		2
effector memory CD8-positive, alpha-beta T cell		2
gamma-delta T cell		2
glomerular visceral epithelial cell			2
kidney glomerular epithelial cell			2
mature natural killer cell		2
memory B cell		2
memory T cell		2
memory regulatory T cell		2
naive regulatory T cell		2
pancreatic cell					2
regulatory T cell		2
renal cortical epithelial cell			1								1
Heart fetal (cardiac muscle cell)		1
Liver fetal (hepatocyte)		1
activated CD4-positive, alpha-beta T cell										1
adult endothelial progenitor cell										1
alternatively activated macrophage										1
astrocyte of the hippocampus			1
chondrocytes									1
endothelial cell of hepatic sinusoid									1
erythroblast										1
glomerular endothelial cell			1
hepatic stellate cell			1
immature natural killer cell		1
inflammatory macrophage										1
kidney capillary endothelial cell			1
megakaryocyte										1
myeloid dendritic cell		1
natural killer cell		1
plasma cell		1
plasmacytoid dendritic cell		1
smooth muscle cell of the brain vasculature			1
cell line
HepG2	378	1						1	2	1					2
GM12878	60	1
EndoC_BH1	15	18							1			6				2	3	2		1
Panc1	13		1						1
smooth muscle cell of the coronary artery	6	8
RCC 7860 HIF1a re-expression	4
RCC 7860 HIF2a over-expression	3
RCC 7860 vector	3
EndoC-BH1
HEK293T															2
iPSC derived cell line	2
MIN6
Synthesized DNA															1
glomerular visceral epithelial cell			1
in vitro differentiated cells
adipocyte	67	8	1	1												1
embryonic stem cell	40	6		5
neural progenitor cell	21	10
pancreatic endoderm	18													1
hepatocyte	15
definitive endodermal cell	8													1
primitive gut cell	8													1
Posterior foregut	5													1
Pancreatic progenitors (progenitor cell of endocrine pancreas)		5
chondrocyte		5
Hepatic endoderm	4
cardiomyocytes (cardiac muscle cell)		1							2	1
immature adipocyte		2		2
cardiomyocytes	3
endocrine cell	3
pancreatic PP cell	3
posterior foregut	3
cardiac precursors (cardiac muscle cell)		1							1
lymphocyte of B lineage (iPSC)									1	1
osteoblast		1														1
preadipocyte		1		1
Progenitor cell of Hypothalamus (neural progenitor cell)		1
neuron cell of Hypothalamus (neuron)		1
white fat cell										1
stem cell
hESC	3													1
SB Ad3.1																			1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

Audit category:

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3331 results