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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
98
total RNA-seq
48
ATAC-seq
6
Hi-C
2
Capture-C
Assay category
131
DNA binding
98
Transcription
48
DNA accessibility
6
3D chromatin structure
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
3
control
1
RNA binding protein
Date released
175
May, 2021
45
May, 2020
38
May, 2022
20
August, 2021
3
March, 2019
3
October, 2022
1
October, 2017
Available data
260
bigWig
198
bam
170
bed narrowPeak
96
tsv
84
tagAlign
19
fastq
6
hic
4
bed bed3+
4
bedpe bed3+
3
bed bedgraph
3
cool
txt
1
bed broadPeak
1
bedpe
Organism
285
Homo sapiens
Biosample type
218
primary cell
43
tissue
15
cell line
9
in vitro differentiated cells
Organ
35
liver
25
pancreas
4
connective tissue
3
epithelium
1
kidney
Project
180
T1D
102
AMP
3
HPAP
Genome assembly (visualization)
285
hg19
269
GRCh38
Lab
AMP-T2D consortium
238
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
files.file_type!
txt
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
285 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
Capture-C
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 23 more…
tissue
islet of Langerhans
21
1
liver
20
kidney
1
cell line
HepG2
14
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
1
1
osteoblast
1
1
See all biosamples
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