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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
12
ChIP-seq
9
pCHi-C
6
MeRIP-seq
5
Hi-C
3
total RNA-seq
2
Capture-C
2
RRBS
2
single cell RNA-seq
1
STARR-seq
Assay category
35
DNA accessibility
12
DNA binding
5
3D chromatin structure
5
Transcription
2
DNA methylation
Target of assay
15
control
3
nucleotide modification
Date released
17
May, 2021
10
February, 2023
10
March, 2020
10
November, 2019
9
October, 2019
6
November, 2020
4
June, 2019
3
August, 2021
2
December, 2017
2
December, 2019
2
July, 2019
1
February, 2020
1
May, 2019
Available data
212
bam
bigWig
150
tsv
txt
63
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
77
Homo sapiens
Biosample type
34
cell line
22
in vitro differentiated cells
16
primary cell
4
tissue
1
stem cell
Organ
34
epithelium
28
pancreas
9
connective tissue
8
kidney
2
embryo
2
heart
1
adipose tissue
1
brain
1
liver
1
musculature of body
1
stomach
1
urinary bladder
Project
76
AMP
1
T1D
Genome assembly (visualization)
22
hg19
11
GRCh38
Lab
69
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
77
inconsistent ontology term
36
audit script error
1
inconsistent replicate
files.file_type!
txt
bigWig
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
ChIP-seq
pCHi-C
MeRIP-seq
Hi-C
total RNA-seq
Capture-C
RRBS
single cell RNA-seq
STARR-seq
cell line
EndoC_BH1
17
2
6
1
2
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
2
Hepatic endoderm
2
cardiac precursors (cardiac muscle cell)
1
1
+ See 1 more…
primary cell
gabaergic neuron
3
microglial cell/astrocyte
3
cardiac fibroblast
1
1
epithelial cell of proximal tubule
1
1
Heart fetal (cardiac muscle cell)
1
+ See 5 more…
tissue
adipose tissue(adipose white tissue)
1
bladder (urinary bladder)
1
cerebellum (Hemisphere)
1
gastric (mucosa of stomach)
1
stem cell
mesenchymal stem cell
1
See all biosamples
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