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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
Assay category
12
DNA accessibility
Date released
10
February, 2023
2
February, 2021
Available data
3254
bam
3028
bigWig
1756
bed narrowPeak
1535
tsv
1302
fastq
1009
bigBed narrowPeak
387
tagAlign
309
bed broadPeak
272
bigBed broadPeak
259
bed bed3+
txt
153
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
13
bed bedMethyl
13
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
12
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent replicate
files.file_type!
txt
audit.WARNING.category!
inconsistent control read length
month_released!
July, 2019
BIOSAMPLE
ASSAY
12 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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