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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
125
ATAC-seq
38
total RNA-seq
10
MeRIP-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
3
single cell RNA-seq
2
Capture-C
1
whole genome sequencing assay
Assay category
131
DNA accessibility
128
DNA binding
41
Transcription
4
3D chromatin structure
1
DNA sequencing
Target of assay
88
histone
88
histone modification
51
broad histone mark
37
narrow histone mark
28
transcription factor
17
control
11
RNA binding protein
5
nucleotide modification
Date released
111
August, 2021
83
May, 2021
58
May, 2022
40
May, 2024
14
May, 2023
10
November, 2020
5
March, 2019
1
October, 2017
Available data
190
bed narrowPeak
120
bigWig
txt
64
xls
26
fastq
25
bam
10
tsv
4
bed bed3+
3
bed bedgraph
3
hic
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
322
Homo sapiens
Biosample type
196
tissue
51
in vitro differentiated cells
40
cell line
35
primary cell
Organ
87
kidney
71
liver
40
heart
37
pancreas
6
epithelium
4
connective tissue
Project
324
HPAP
322
AMP
236
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
118
GRCh38
102
hg19
Lab
AMP-T2D consortium
101
Kyle Gaulton, UCSD
85
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
files.file_type!
txt
tar
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
322 results
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ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
snATAC-seq
STARR-seq
Hi-C
single cell RNA-seq
Capture-C
whole genome sequencing assay
tissue
kidney
75
6
1
3
left cardiac atrium
40
liver
20
20
islet of Langerhans
23
1
4
2
pancreas
1
in vitro differentiated cells
embryonic stem cell
37
5
5
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
9
2
1
1
EndoC_BH1
6
HEK293T
2
Synthesized DNA
1
primary cell
CD8-positive, alpha-beta T cell
33
2
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