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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
18
single cell RNA-seq
4
WGBS
3
DNase-seq
3
total RNA-seq
2
ATAC-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
35
DNA binding
21
Transcription
5
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
24
histone
24
histone modification
15
broad histone mark
9
narrow histone mark
6
control
5
transcription factor
3
RNA binding protein
Date released
35
April, 2019
18
August, 2021
9
July, 2019
3
June, 2019
3
March, 2020
Available data
44
bam
39
bigWig
34
bed narrowPeak
31
bigBed narrowPeak
22
tsv
3
bed bed3+
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
68
Homo sapiens
Biosample type
68
tissue
Organ
68
heart
Project
68
AMP
Genome assembly (visualization)
39
hg19
38
GRCh38
Lab
68
AMP-T2D consortium
files.file_type!
txt
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
tissue
heart left ventricle
35
18
4
3
3
2
1
1
1
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