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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
27
snATAC-seq
22
ATAC-seq
13
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
Assay category
558
Transcription
49
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
624
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
306
October, 2019
257
August, 2021
194
February, 2023
193
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
572
bam
559
tsv
551
bigWig
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
bed bed3+
Organism
624
Homo sapiens
Biosample type
456
tissue
95
cell line
47
primary cell
26
in vitro differentiated cells
Organ
454
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
32
epithelium
32
pancreas
8
skeleton
6
limb
3
kidney
2
liver
Project
579
AMP
45
HPAP
Genome assembly (visualization)
572
hg19
568
GRCh38
Lab
579
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
txt
bed bed3+
month_released!
March, 2020
BIOSAMPLE
ASSAY
624 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
tissue
adipose tissue
381
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
distal epiphysis
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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