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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1237
total RNA-seq
974
ChIP-seq
467
ATAC-seq
222
single cell RNA-seq
200
DNase-seq
58
WGBS
56
pCHi-C
56
snATAC-seq
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
56
DNA accessibility
Date released
21
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Available data
fastq
21
zippedFastqFolder
1
bed bed3+
txt
Organism
55
Homo sapiens
Biosample type
29
primary cell
27
tissue
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
Project
21
HPAP
18
T1D
10
LungMap
7
AMP
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
txt
fastq
BIOSAMPLE
ASSAY
56 results
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snATAC-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
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